The windows were showing up but with a plain white mini window. Now I find it productive to have this plugin enabled as when you are tabbing through it often is quicking and faster to look at the mini color layout to decied if this is the window you are infact looking for.

Before

To fix
Open up compiz settings manager.
go to Application Switcher plugin
Uncheck the MipMap option.

After

Hope this helps some one else out